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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
Borry M, Forsythe A, Andrades Valtueña A, Hübner A, Ibrahim A, Quagliariello A, White AE, Kocher A, Vågene ÅJ, Bartholdy BP, Spurīte D, Ponce-Soto GY, Neuman…
F1000Research · doi:10.12688/f1000research.134798.2 · PMC11387932
PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA <i>de novo</i> assembly
Borry M, Hübner A, Rohrlach AB, Warinner C.
PeerJ · doi:10.7717/peerj.11845 · PMC8323603
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
Fellows Yates JA, Lamnidis TC, Borry M, Andrades Valtueña A, Fagernäs Z, Clayton S, Garcia MU, Neukamm J, Peltzer A.
PeerJ · doi:10.7717/peerj.10947 · PMC7977378
Reconstruction of ancient microbial genomes from the human gut
Wibowo MC, Yang Z, Borry M, Hübner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, García-Ortiz H, Martínez-Hernández A, Luber JM,…
Nature · doi:10.1038/s41586-021-03532-0 · PMC8189908
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content
Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Sa…
PeerJ · doi:10.7717/peerj.9001 · PMC7169968