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Topics in this archive
Showing 1–10 of 10
The Phylodynamic Threshold of Measurably Evolving Populations
Weber A, Kende J, Duitama González C, Översti S, Duchene S.
Molecular biology and evolution · doi:10.1093/molbev/msag133 · PMC13278492
Assessing the effect of model specification and prior sensitivity on Bayesian tests of temporal signal
Tay JH, Kocher A, Duchene S.
PLoS computational biology · doi:10.1371/journal.pcbi.1012371 · PMC11573219
Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis
Eaton K, Featherstone L, Duchene S, Carmichael AG, Varlık N, Golding GB, Holmes EC, Poinar HN.
Communications biology · doi:10.1038/s42003-022-04394-6 · PMC9852431
The Recovery, Interpretation and Use of Ancient Pathogen Genomes
Duchêne S, Ho SYW, Carmichael AG, Holmes EC, Poinar H.
Current biology : CB · doi:10.1016/j.cub.2020.08.081 · PMC7534838
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF,…
PLoS computational biology · doi:10.1371/journal.pcbi.1006650 · PMC6472827
Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations
Duchene S, Lemey P, Stadler T, Ho SY, Duchene DA, Dhanasekaran V, Baele G.
Preprint (PPR99084) · doi:10.1101/810697
The molecular clock of Mycobacterium tuberculosis
Menardo F, Duchêne S, Brites D, Gagneux S.
PLoS pathogens · doi:10.1371/journal.ppat.1008067 · PMC6759198
The molecular clock of Mycobacterium tuberculosis
Menardo F, Duchêne S, Brites D, Gagneux S.
Preprint (PPR68615) · doi:10.1101/532390
The paradox of HBV evolution as revealed from a 16th century mummy
Patterson Ross Z, Klunk J, Fornaciari G, Giuffra V, Duchêne S, Duggan AT, Poinar D, Douglas MW, Eden JS, Holmes EC, Poinar HN.
PLoS pathogens · doi:10.1371/journal.ppat.1006750 · PMC5754119
17th Century Variola Virus Reveals the Recent History of Smallpox
Duggan AT, Perdomo MF, Piombino-Mascali D, Marciniak S, Poinar D, Emery MV, Buchmann JP, Duchêne S, Jankauskas R, Humphreys M, Golding GB, Southon J, Devault…
Current biology : CB · doi:10.1016/j.cub.2016.10.061 · PMC5196022