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Showing 1–8 of 8
Refining filtering criteria of Kraken family of tools for accurate taxonomic profiling of ancient metagenomic data
Oskolkov N.
Frontiers in microbiology · doi:10.3389/fmicb.2026.1603339 · PMC13223122
The spatiotemporal distribution of human pathogens in ancient Eurasia
Sikora M, Canteri E, Fernandez-Guerra A, Oskolkov N, Ågren R, Hansson L, Irving-Pease EK, Mühlemann B, Holtsmark Nielsen S, Scorrano G, Allentoft ME, Valeur…
Nature · doi:10.1038/s41586-025-09192-8 · PMC12286840
Identification of microbial pathogens in Neolithic Scandinavian humans
Bergfeldt N, Kırdök E, Oskolkov N, Mirabello C, Unneberg P, Malmström H, Fraser M, Sanchez-Quinto F, Jorgensen R, Skar B, Lidén K, Jakobsson M, Storå J, Göth…
Scientific reports · doi:10.1038/s41598-024-56096-0 · PMC10920878
Unraveling the ancient fungal DNA from the Iceman gut
Oskolkov N, Sandionigi A, Götherström A, Canini F, Turchetti B, Zucconi L, Mimmo T, Buzzini P, Borruso L.
BMC genomics · doi:10.1186/s12864-024-11123-2 · PMC11660557
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
Borry M, Forsythe A, Andrades Valtueña A, Hübner A, Ibrahim A, Quagliariello A, White AE, Kocher A, Vågene ÅJ, Bartholdy BP, Spurīte D, Ponce-Soto GY, Neuman…
F1000Research · doi:10.12688/f1000research.134798.2 · PMC11387932
Historical RNA expression profiles from the extinct Tasmanian tiger
Mármol-Sánchez E, Fromm B, Oskolkov N, Pochon Z, Kalogeropoulos P, Eriksson E, Biryukova I, Sekar V, Ersmark E, Andersson B, Andersson B, Dalén L, Friedlände…
Genome research · doi:10.1101/gr.277663.123 · PMC10552650
aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow
Pochon Z, Bergfeldt N, Kırdök E, Vicente M, Naidoo T, van der Valk T, Altınışık NE, Krzewińska M, Dalén L, Götherström A, Mirabello C, Unneberg P, Oskolkov N.
Genome biology · doi:10.1186/s13059-023-03083-9 · PMC10591440
The spatiotemporal distribution of human pathogens in ancient Eurasia and the emergence of zoonotic diseases
Sikora M, Canteri E, Fernandez-Guerra A, Oskolkov N, Ågren R, Hansson L, Irving-Pease EK, Mühlemann B, Holtsmark Nielsen S, Scorrano G, Allentoft ME, Seersho…
bioRxiv · doi:10.1101/2023.10.06.561165