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Topics in this archive
Showing 1–8 of 8
Helicobacter pylori's historical journey through Siberia and the Americas
Moodley Y, Brunelli A, Ghirotto S, Klyubin A, Maady AS, Tyne W, Muñoz-Ramirez ZY, Zhou Z, Manica A, Linz B, Achtman M.
Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.2015523118 · PMC8237685
Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus
Achtman M, Zhou Z.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences · doi:10.1098/rstb.2019.0573 · PMC7702799
The EnteroBase user's guide, with case studies on <i>Salmonella</i> transmissions, <i>Yersinia pestis</i> phylogeny, and <i>Escherichia</i> core genomic diversity
Zhou Z, Alikhan NF, Mohamed K, Fan Y, Agama Study Group, Achtman M.
Genome research · doi:10.1101/gr.251678.119 · PMC6961584
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Zhou Z, Alikhan NF, Sergeant MJ, Luhmann N, Vaz C, Francisco AP, Carriço JA, Achtman M.
Genome research · doi:10.1101/gr.232397.117 · PMC6120633
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe
Kay GL, Sergeant MJ, Zhou Z, Chan JZ, Millard A, Quick J, Szikossy I, Pap I, Spigelman M, Loman NJ, Achtman M, Donoghue HD, Pallen MJ.
Nature communications · doi:10.1038/ncomms7717 · PMC4396363
Age of the association between Helicobacter pylori and man
Moodley Y, Linz B, Bond RP, Nieuwoudt M, Soodyall H, Schlebusch CM, Bernhöft S, Hale J, Suerbaum S, Mugisha L, van der Merwe SW, Achtman M.
PLoS pathogens · doi:10.1371/journal.ppat.1002693 · PMC3349757
Distinct clones of Yersinia pestis caused the black death
Haensch S, Bianucci R, Signoli M, Rajerison M, Schultz M, Kacki S, Vermunt M, Weston DA, Hurst D, Achtman M, Carniel E, Bramanti B.
PLoS pathogens · doi:10.1371/journal.ppat.1001134 · PMC2951374
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner…
Nature genetics · doi:10.1038/ng.705 · PMC2999892