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Phylogenetics and Coalescent Analysis·2025
Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes
Deng Y, Nielsen R, Song YS.
Nature genetics · doi:10.1038/s41588-025-02317-9 · PMC12425808
Phylogenetics and Coalescent Analysis·2025
A general framework for branch length estimation in Ancestral Recombination Graphs
Deng Y, DeWitt WS, Song YS, Nielsen R.
Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.2504461122 · PMC12684933
Paleoproteomics·2022
Ancient proteins resolve controversy over the identity of Genyornis eggshell
Demarchi B, Stiller J, Grealy A, Mackie M, Deng Y, Gilbert T, Clarke J, Legendre LJ, Boano R, Sicheritz-Pontén T, Magee J, Zhang G, Bunce M, Collins MJ, Mill…
Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.2109326119 · PMC9995833