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Likelihoods for a general class of ARGs under the SMC
Bisschop G, Kelleher J, Ralph P.
Genetics · doi:10.1093/genetics/iyaf103 · PMC12774825
On ARGs, pedigrees, and genetic relatedness matrices
Lehmann B, Lee H, Anderson-Trocmé L, Kelleher J, Gorjanc G, Ralph PL.
Genetics · doi:10.1093/genetics/iyaf219 · PMC12774834
Accessible, Realistic Genome Simulation with Selection Using stdpopsim
Gower G, Pope NS, Rodrigues MF, Tittes S, Tran LN, Alam O, Cavassim MIA, Fields PD, Haller BC, Huang X, Jeffrey B, Korfmann K, Kyriazis CC, Min J, Rebollo I,…
Molecular biology and evolution · doi:10.1093/molbev/msaf236 · PMC12574676
Efficient ancestry and mutation simulation with msprime 1.0
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B,…
Genetics · doi:10.1093/genetics/iyab229 · PMC9176297
Inferring whole-genome histories in large population datasets
Kelleher J, Wong Y, Wohns AW, Fadil C, Albers PK, McVean G.
Nature genetics · doi:10.1038/s41588-019-0483-y · PMC6726478