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Accessible, Realistic Genome Simulation with Selection Using stdpopsim
Gower G, Pope NS, Rodrigues MF, Tittes S, Tran LN, Alam O, Cavassim MIA, Fields PD, Haller BC, Huang X, Jeffrey B, Korfmann K, Kyriazis CC, Min J, Rebollo I,…
Molecular biology and evolution · doi:10.1093/molbev/msaf236 · PMC12574676
Archaic introgression and the distribution of shared variation under stabilizing selection
Ragsdale AP.
PLoS genetics · doi:10.1371/journal.pgen.1011623 · PMC11964463
Population histories of the Indigenous Adivasi and Sinhalese from Sri Lanka using whole genomes
Urban Aragon JA, Bandyopadhyay E, Fernando AS, de la Fuente Castro C, Welikala AHJ, Biddanda A, Witonsky D, Sander N, Kotelawala JT, Pasupuleti N, Steinrücke…
Current biology : CB · doi:10.1016/j.cub.2025.04.039 · PMC12242918
Demographic Modeling of Admixed Latin American Populations from Whole Genomes
Medina-Muñoz SG, Ortega-Del Vecchyo D, Cruz-Hervert LP, Ferreyra-Reyes L, García-García L, Moreno-Estrada A, Ragsdale AP.
Preprint (PPR627213) · doi:10.1101/2023.03.06.531060
A weakly structured stem for human origins in Africa
Ragsdale AP, Weaver TD, Atkinson EG, Hoal EG, Möller M, Henn BM, Gravel S.
Nature · doi:10.1038/s41586-023-06055-y · PMC10208968
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times
Ragsdale AP, Thornton KR.
Molecular biology and evolution · doi:10.1093/molbev/msad160 · PMC10404577
Efficient ancestry and mutation simulation with msprime 1.0
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B,…
Genetics · doi:10.1093/genetics/iyab229 · PMC9176297
Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes
McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E.
Molecular biology and evolution · doi:10.1093/molbev/msab108 · PMC8321528