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Topics in this archive
Showing 1–10 of 15
Ancient Species Diversity and Niche Adaptation in Tannerella and Porphyromonas Revealed Through Pangenomics
Galtier A, Warinner C, Velsko IM.
Genome biology and evolution · doi:10.1093/gbe/evag136 · PMC13298647
Streptococcus abundance and oral site tropism in humans and non-human primates reflects host and lifestyle differences
Velsko IM, Warinner C.
NPJ biofilms and microbiomes · doi:10.1038/s41522-024-00642-1 · PMC11748738
Exploring the potential of dental calculus to shed light on past human migrations in Oceania
Velsko IM, Fagernäs Z, Tromp M, Bedford S, Buckley HR, Clark G, Dudgeon J, Flexner J, Galipaud JC, Kinaston R, Lewis CM, Matisoo-Smith E, Nägele K, Ozga AT,…
Nature communications · doi:10.1038/s41467-024-53920-z · PMC11586442
Assessing the validity of a calcifying oral biofilm model as a suitable proxy for dental calculus
Bartholdy BP, Velsko IM, Gur-Arieh S, Fagernäs Z, Warinner C, Henry AG.
Preprint (PPR665497) · doi:10.1101/2023.05.23.541904
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
Borry M, Forsythe A, Andrades Valtueña A, Hübner A, Ibrahim A, Quagliariello A, White AE, Kocher A, Vågene ÅJ, Bartholdy BP, Spurīte D, Ponce-Soto GY, Neuman…
F1000Research · doi:10.12688/f1000research.134798.2 · PMC11387932
Exploring archaeogenetic studies of dental calculus to shed light on past human migrations in Oceania
Velsko IM, Fagernäs Z, Tromp M, Bedford S, Buckley HR, Clark G, Dudgeon J, Flexner J, Leal-Tamarii A, Lewis CM, Matisoo-Smith E, Nägele K, Ozga AT, Rohrlach…
Preprint (PPR745612) · doi:10.1101/2023.10.18.563027
HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data
Dimopoulos EA, Carmagnini A, Velsko IM, Warinner C, Larson G, Frantz LAF, Irving-Pease EK.
PLoS computational biology · doi:10.1371/journal.pcbi.1010493 · PMC9555677
Understanding the microbial biogeography of ancient human dentitions to guide study design and interpretation
Fagernäs Z, Salazar-García DC, Haber Uriarte M, Avilés Fernández A, Henry AG, Lomba Maurandi J, Ozga AT, Velsko IM, Warinner C.
FEMS microbes · doi:10.1093/femsmc/xtac006 · PMC10117714
Ancient dental calculus preserves signatures of biofilm succession and interindividual variation independent of dental pathology
Velsko IM, Semerau L, Inskip SA, García-Collado MI, Ziesemer K, Ruber MS, Benítez de Lugo Enrich L, Molero García JM, Valle DG, Peña Ruiz AC, Salazar-García…
PNAS nexus · doi:10.1093/pnasnexus/pgac148 · PMC9802386
High conservation of the dental plaque microbiome community across populations with differing subsistence strategies and levels of market integration
Velsko IM, Gallois S, Stahl R, Henry AG, Warinner C.
Preprint (PPR524806) · doi:10.1101/2022.07.27.501666