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Topics in this archive
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Assessing Ancient DNA Sampling Strategies for Natural Selection Inference in Humans Using Allele Frequency Time Series Data
Anchieri L, G Amorim CE, Neuenschwander S, Malaspinas AS.
Genome biology and evolution · doi:10.1093/gbe/evaf234 · PMC12862635
Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data
Koptekin D, Yapar E, Vural KB, Sağlıcan E, Altınışık NE, Malaspinas AS, Alkan C, Somel M.
Genome biology · doi:10.1186/s13059-024-03462-w · PMC11721506
Towards predicting the geographical origin of ancient samples with metagenomic data
Bozzi D, Neuenschwander S, Cruz Dávalos DI, Sousa da Mota B, Schroeder H, Moreno-Mayar JV, Allentoft ME, Malaspinas AS.
Scientific reports · doi:10.1038/s41598-023-40246-x · PMC11411106
Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA
Garrido Marques A, Rubinacci S, Malaspinas AS, Delaneau O, Sousa da Mota B.
Scientific reports · doi:10.1038/s41598-024-56584-3 · PMC10940295
Imputation of ancient human genomes
Sousa da Mota B, Rubinacci S, Cruz Dávalos DI, G Amorim CE, Sikora M, Johannsen NN, Szmyt MH, Włodarczak P, Szczepanek A, Przybyła MM, Schroeder H, Allentoft…
Nature communications · doi:10.1038/s41467-023-39202-0 · PMC10282092
Inference of natural selection from ancient DNA
Dehasque M, Ávila-Arcos MC, Díez-Del-Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas AS, Marques-Bonet T, Martin MD, Murray GGR, Papadopulos AST…
Evolution letters · doi:10.1002/evl3.165 · PMC7156104
In-solution Y-chromosome capture-enrichment on ancient DNA libraries
Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC.
BMC genomics · doi:10.1186/s12864-018-4945-x · PMC6092841
Human bony labyrinth is an indicator of population history and dispersal from Africa
Ponce de León MS, Koesbardiati T, Weissmann JD, Milella M, Reyna-Blanco CS, Suwa G, Kondo O, Malaspinas AS, White TD, Zollikofer CPE.
Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.1717873115 · PMC5910833
Ancient nuclear genomes enable repatriation of Indigenous human remains
Wright JL, Wasef S, Heupink TH, Westaway MC, Rasmussen S, Pardoe C, Fourmile GG, Young M, Johnson T, Slade J, Kennedy R, Winch P, Pappin M, Wales T, Bates WB…
Science advances · doi:10.1126/sciadv.aau5064 · PMC6300400
Decline of genetic diversity in ancient domestic stallions in Europe
Wutke S, Sandoval-Castellanos E, Benecke N, Döhle HJ, Friederich S, Gonzalez J, Hofreiter M, Lõugas L, Magnell O, Malaspinas AS, Morales-Muñiz A, Orlando L,…
Science advances · doi:10.1126/sciadv.aap9691 · PMC5906072